PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G397200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 276aa    MW: 30257.1 Da    PI: 10.0129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G397200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2073122356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa+++++g+
  Potri.001G397200.1  73 FRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRGA 122
                         8*******.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-1972131No hitNo description
PfamPF008474.8E-1472121IPR001471AP2/ERF domain
SMARTSM003801.0E-3572135IPR001471AP2/ERF domain
PROSITE profilePS5103224.09272129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3273130IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2273130IPR016177DNA-binding domain
PRINTSPR003674.6E-117384IPR001471AP2/ERF domain
PRINTSPR003674.6E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPFSLSSSLL LRFINKPAPC LFPIHPRTLS SNESLFFFLI KRETGSPLNT KMAPIEKPSS  60
SNPNSPTRSE IRFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR AYDAAAREFR  120
GAKAKTNFPT VGELIPIPTR SPSQSSTVES SSPTHPRAAS PPPPLDLTLN SAHHNTARHQ  180
FPDGVSFHGG AWFPLPAAQR PVFFFDAFAQ AKNNDKISIA NNINMCRFDR TAMVNGGGVQ  240
SDSDSSSVLD YDHHHDNKGL SLDLDLNLPP PPEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1973129360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A7e-1973129663ATERF1
2gcc_A7e-1973129663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4772740.0KC477274.1 Populus tomentosa ERF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370222.11e-164Ethylene responsive element binding factor 4 family protein
SwissprotO803402e-44ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLB9N1E41e-164B9N1E4_POPTR; Ethylene responsive element binding factor 4 family protein
STRINGPOPTR_0001s40770.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-24ethylene responsive element binding factor 4